rs36410538 SNP Detail

Summary

• ID
  rs36410538
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:131075844 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AACATATGAG CCTATGAGAG CCATTCTCAT TCAAACCACC
  ACATCTTCCC ACATCGATAT TTAATCAAGG AAATGCCCCC ACCGACTTTT GTACAGGCCA
  R
  TCTGATAGAG TCGATTCCTC AACTGAGGTT CTCCTTTTCA GATGACTCTA ACTTGTATCA
  AAGTGACAAA ACTAACTAAC TAACTAACTA ACCAGTATA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51633059	NES14658210	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	G	G	A	G	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36410538					SNP	A	A	A	A	A	G	G	G	A	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51633059	NES14658210	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:131075844 () rs orientation: forward

Symbol	Name	Function Class
Gm18492	predicted gene, 18492	1773 bp downstream
Rr585318	regulatory region 585318	785 bp proximal
Rr585319	regulatory region 585319	1620 bp proximal