rs36404836 SNP Detail

Summary

• ID
  rs36404836
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:69768879 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGCCGATT GTGCTGAAGC
  GCGAATTTGA GCTACTGGCA GCTTTCTGCT CTTTCTCACA ACACACTTTC AGCAGGATGG
  GAGCGCCAGC ATTACGCAGA GGGAGCCTTA TGCTATTGGA CCGTGGTGTC TCCATGCAGG
  AAGCAGGGTG TCCCCCAAAG CTGAAGGTGG TTGGGGGGCT GGGAATGAGC CAGTGGAACA
  Y
  ATGCCCATGC TTGGTGCTTT TTACAGCTCT CTTTCCTTTC AGCTCTTGTA TTTAGTGCTT
  TTATTTCTTA ACCACTTTAT GTCGGTCACA TTTCTTATCT CTTGGCTTCT CCTGACACAC
  GTTGCAGTGT TTGCCAGGCA GACCTGATCA CTTACAGCTT TAGAGGGGGA AATAGAAGCC
  CTGCGAAATG ACTGAGGGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss50977774	NES13927089	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs36404836					SNP	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50977774	NES13927089	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:69768879 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13263	CpG island 13263	125 bp distal
Rr578229	regulatory region 578229	1635 bp distal
Rr578230	regulatory region 578230	1116 bp distal
Rr578231	regulatory region 578231	1262 bp distal
Rr578232	regulatory region 578232	1213 bp distal
Rr578233	regulatory region 578233	212 bp distal
Rr578234	regulatory region 578234	within coordinates
Sptssb	serine palmitoyltransferase, small subunit B	1606 bp upstream
Tssr903	transcription start site region 903	1682 bp upstream
Tssr33558	transcription start site region 33558	1645 bp upstream
Tssr33559	transcription start site region 33559	151 bp upstream