rs36404738 SNP Detail

Summary

• ID
  rs36404738
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:22192749 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGGCTTTC TTAGTGGTAG
  AGGCAGGGTA AGGAAAAGCT ATTTACAGAG CAGTGCAAGT CTGGGATAAG AGGTGATTTG
  AGATGCTTTG GAAATAACTA AACATGGGGT GAGGGGGTTT CCCTGTTTAC TTCATGTAAT
  GACACCTTGA AGCCAGTTGC GGCCAAAAGG CAGTTTTCAG TTTTCTATTT TCCATTCTTT
  S
  CTTGAGACTT GCCTACTGCT GCTGGGAGGT ACACAGTTAA GGAGGAAGTG CAGCAGTGTA
  CTTACTCCCC ATGCCCCAGT AGGCTCCTGC TTCAGCCTGT ATTATCCAGG AAGAACAGGA
  GAACTGTTTG TGCACACTAC GCTTTGAATG AAACTGAGAT TACATTAATA GTAGTACTTA
  AATTGTTGTA ACTAAGTGAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51433272	NES14434434	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36404738					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51433272	NES14434434	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:22192749 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr574211	regulatory region 574211			within coordinates
Rr574212	regulatory region 574212			1267 bp proximal
Tbl1xr1	transducin (beta)-like 1X-linked receptor 1			Intron
				Noncoding-Transcript-Variant
Tssr843	transcription start site region 843			1915 bp downstream