rs36401515 SNP Detail

Summary

• ID
  rs36401515
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:65900550 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGAACATC TTGTAGCACC
  AGTAGATATT TTGCTATAGG GTATGTGTCT AGTAAATTAA CGTAAATAGT CCATGAACAC
  AATTCTGCAC ATTGGTGAAC ACAGCTTTAA AGAGCAAGCT GCAGTCTCAA GAGCTTGAAG
  TGCATGAGAA ACATGCCAGT TAGCTGCACA CTGTGGACAG CAGGTTAGTG TGACAGCAAC
  Y
  GTGATGGAGT GAGAGCAGAA GCCAACACAC ACAATACCAG GCCACTCTGA CTCATCCCAT
  CTTTTCAACA ATATAATGAC AGAGGAGAGA GATGCTGCTC TGATTACATT TTTTTTTCCT
  CTGTGTAGCC CTGGCTGTCC TAGAAATCGC TCTGTAGGCC AGGCTGGCCT AGAACTCACA
  GAGATCTGCC TGACTCTGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51540032	NES14688882	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36401515					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51540032	NES14688882	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:65900550 () rs orientation: forward

Symbol	Name	Function Class
Rr577779	regulatory region 577779	1707 bp distal
Rr577780	regulatory region 577780	1933 bp distal
Rr577781	regulatory region 577781	within coordinates
Rr577782	regulatory region 577782	702 bp proximal