rs36400464 SNP Detail

Summary

• ID
  rs36400464
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:97950800 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTTATTTG AAGAGGCTAC
  AAAGCAACAA GTATTGCCAA TTTAAAACAT TGCTTGTCAG AGCAAGGAGT GAAACACATT
  GTAGGCTGCT CAGATTACAC CGTCTGGGGT ACCAGACTTA ATTACTCATG TTTGAGATTC
  TTAAAACAAA GGGAGGCTTT TAAGCCTGTG ATACATAGCT GGCACGGCCC AAAAAGCTCC
  R
  GAAAGCCTAG AAAATTGTGA TGGGGACTCC ATCAAGCCTG GATACCTTCA GTCTGTCTTT
  TCGAAGATAA ATTCCTGGTG CGTTGGACCT GGTAAAGATC ACTGACTGAT ATGTACCTTG
  TTGTCTGCAG TGTTTGTATA CAGTGGAGGC TAATAAATGT GAATATGAAG CCTCGTCTGG
  ACTGAATGGC TTCAAGGGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51002322	NES13912239	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36400464					SNP	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51002322	NES13912239	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:97950800 () rs orientation: forward

Symbol	Name	Function Class
Notch2	notch 2	Intron
Rr581622	regulatory region 581622	within coordinates
Rr581623	regulatory region 581623	1217 bp proximal
Tssr30816	transcription start site region 30816	1603 bp upstream