rs36399516 SNP Detail

Summary

• ID
  rs36399516
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:97946234 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACGTAGAG TATTTGAGAC
  TTTCCACGGA GACATACTCG GGCGCATAGC CAAAGTGGTT ACAATACCCT GGTTTTAATA
  TTGTCGGTGA GGTAATCGTG TGTTGGGAGA GGGGATGCTT GTTTCCTCTC TGGCACTCCA
  CCAAACCCCA CCACTGACTC CTTTGTCCCT TGAACCTAGG CTTACTTGTA CCAGTACCGG
  Y
  TTTTCCAAAG GATTTGACCC TGGTAATGAG ATGAGGTGAT GGGAAGGCAG GCCCCAGCCC
  TGGGCATGGA CTGGTGTAAC TGGTAAACTC CCTCTTAAAT CCCTCTGTTC AACAGGCCTC
  TCGCTCCCAT GTCCTCAGTG GGGTGAATTG TTCTCGAGGA GAGAATTTTA AGAGTGATAA
  ACAAGAGGGA TTAAAATGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51002348	NES13912371	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	T	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36399516					SNP	C	C	C	C	C	C	T	C	C	T	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51002348	NES13912371	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:97946234 () rs orientation: forward

Symbol	Name	Function Class
Notch2	notch 2	Intron
Rr581618	regulatory region 581618	1889 bp distal
Rr581619	regulatory region 581619	within coordinates
Rr581620	regulatory region 581620	1918 bp proximal
Tssr30815	transcription start site region 30815	1475 bp downstream