rs36397721 SNP Detail

Summary

• ID
  rs36397721
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:24215783 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTATTCAA CAGAGATTTG
  TCAGGGACAC CCTCCACCCC ACCTCCCTAC CCACACTCAC ATCCAACACC CCATATCCCA
  TACCCCATAC CCCTGTGAGA CATGAAGAAT GAAACTCAGC ACAGCACCAT CTTTGCAGAC
  ACAGGGTCAT TGCCCTCCAG AGACTGACCT CCCAGCTTCC TTTCCTTACA CATTTAAGCA
  W
  AATACAACTT TTGGCCCATG ACCTTTCAAT AAGAATCAGT TATATCAGTT GATAAGCAGA
  GCTCAGGGCT GGTATCTTGG GGAGGGGGTA TCTGTGATAA GCATAAGGAT AGATTCTATT
  GAAGGAGATT GCAAAGAATA CGGGGGCTAT TTCATACGGA TGTGTTCTGG TCACTTCAGA
  GTTAGGGCCT AAACAGTTCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51559359	NES14863173	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36397721					SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51559359	NES14863173	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:24215783 () rs orientation: forward

Symbol	Name	Function Class
Rr627208	regulatory region 627208	1334 bp distal