rs36394399 SNP Detail

Summary

• ID
  rs36394399
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:107029164 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGATGCTAA TAAAACAGAC
  ATCTCAGGTG ACAGGAAGTT CAGCAAAGAC ACTGAAGGGC ACAAAAGGCA GCCTCACTTT
  TGGTGACCTG GAACAGAGTT TATCAACTGA CAGTAACTCT GGTATTTGAG AGCCTTAAGC
  CTGAGGTCAG TAGGTGAATG TACCACTCCA GTCACTTGCC TGCTCAAGTT TTATAGCTGA
  Y
  AAGCATGGCT CCATCCCTTA AGCATATGTA CAGGGTGGGG TAGAAAGTCT ACAGACCAGT
  CCTTTGCCCA GACAGATATC TGCTGAAGGT TTTCACTCTG CAAACACTTA AGACTGTAGC
  CCTTCATTAG AACATTTACC ACCCTTGAGT GTGCTAATTA GGGATTCACA AGAAAGTAAT
  CATTTGCCAA GGTCACAAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
ss51400745	NES13726862	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
rs36394399					SNP	C	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51400745	NES13726862	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:107029164 () rs orientation: forward

Symbol	Name	Function Class
Rr379902	regulatory region 379902	within coordinates
Rr635986	regulatory region 635986	within coordinates