rs36392693 SNP Detail

Summary

• ID
  rs36392693
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:151877688 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAAATCTT TTCCCAAAAT
  TGCTAAAATA AAACAACTGG TGTCAGACTC TAAAGTTTGA AGGAGCACAA GGTAACTCAG
  CCAAGCTGAA CCGAGTTTCA TTCTTACCTG GACGAATTGT TTCCCTGCTG GCCATAAAGC
  CTGCAGAGAC TCCCACAGCA GAGCCCCGAG TGAGCAAGAA GACGTGAACT TGTGTGCCTA
  Y
  GACTCACATG AAACTGGATG CAGTAGCACA CGGTGTGACT CCAGCACTCC TACAGGTCAG
  GAGGGAATGG TGGGAGATTC CCAGGAAGCT CACAGAGCAA GCAGAAACCC CGCCTCAAGA
  AATGTGGAAG ATAGGTCCAG CATCCGATGT TGCCCTTTGA CCTACACACA CTCACTCACA
  ACATGGATAT GCACATGTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51060690	NES13428248	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs36392693					SNP	T	T	T	T	C	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51060690	NES13428248	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151877688 () rs orientation: forward

Symbol	Name	Function Class
Gm64603	predicted gene, 64603	within coordinates
Gm64610	predicted gene, 64610	within coordinates
Rr587476	regulatory region 587476	303 bp distal
Rr587477	regulatory region 587477	within coordinates