rs36391452 SNP Detail

Summary

• ID
  rs36391452
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:8415442 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTTTTCAT AACTTGAGTT
  TGCACACTCC TTGGCCACTG CTCCTACAGT TCCCAGGTGC ATCAATTAAA AGTTGTTTCC
  TGTGGATCAC GTCAGGAAGA GTTCAGAGTC TAAAGCTCTT CATATTGTGG CTCGTCGCTG
  CTGCTTCACC TGTCCAGTGA GCTTGTGTTT CAGAGAAGAG AATGGAATCC AGGAAGTCTG
  R
  GAGCCTTGCT GAAGCCCTGT GGTGCAGCAG GGAGCACTGG CACCCAGGGC CAGGCACTGA
  CTTTCATCTA GAAATCCACA AATAATGGTA TATAGCTCTA GTTCTTAATA ATTCCATTCC
  CTCTCCCTGA AACAATGGGA ATGCTGTGGA AGGGTAGTCA GGAGTTATTT ATACATTTAT
  AGCTTACTGT TGATGAGCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51551475	NES14868299	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	A	A	G	A	A	A	G	A	A	G	A
ss132968432	ENSMUSSNP6804662	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36391452					SNP	G	G	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51551475	NES14868299	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:8415442 () rs orientation: forward

Symbol	Name	Function Class
1810015A16Rik	RIKEN cDNA 1810015A16 gene	within coordinates
Gm45062	predicted gene 45062	Intron
Rr626390	regulatory region 626390	1861 bp distal
Rr626391	regulatory region 626391	752 bp distal
Rr626392	regulatory region 626392	1479 bp proximal
Umad1	UMAP1-MVP12 associated (UMA) domain containing 1	Intron