rs36391273 SNP Detail

Summary

• ID
  rs36391273
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:119744641 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAAAAGCC AAGATCATTG
  CCACCATCAG CCACTATTAT CACTGTCAAT TATCATGAGT GACACATGTG TCGGATACTT
  TACATAAAAA TTTAAAACAC AATTAGTGCT GTGAATAAGA CACTAAATGG CACACTGCCA
  AGTTGTGCCC AAATGCTTCG CTTCCATGAC AACACTAAGA GAGAACACAC AGGCCTGTGG
  R
  AAGTGTGTAC CTTACTTTTC TTTCGATTTA TCTTGTTTCC TGACTGATAA ATATCAGCAA
  GTAATTTTTA AAAAAACTAG AAAGACATAC AGAAAATGAA AGTTTAATCC TTAGACCCAA
  CTGCTAACAC CTGGCTACTG CTTTCTTGTG TCTGTGTACT ATCATGGATG AAGATCTAGT
  GCTGGACTAG CATAGCTTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51014232	NES13912228	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36391273					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51014232	NES13912228	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:119744641 () rs orientation: forward

Symbol	Name	Function Class
Gm65304	predicted gene, 65304	1700 bp upstream
Rr583955	regulatory region 583955	1711 bp distal
Rr583956	regulatory region 583956	1210 bp distal
Rr583957	regulatory region 583957	within coordinates