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rs36391182 SNP Detail
Summary
  • ID
    rs36391182
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr3:102240868 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TTGGATGGTC TGACTGTGGA
    GGGACAGAGG GCATCACTAC AGTAAGGCTC CCAGCAGGAA TGTTATGCCA CTGCCTTGAT
    TAAGATCCTT TCCTCTTCAC TTGGCCTATT CCCATTTGCT GTCTCAGACA ACCTTCCCCA
    CGTTGCCCAA CAATGTCATT TTGATCTCAC CTGGTTTACC CACATGCACT GTGCTGGACA
    Y
    CAGGAAAACA TTATCTCAGG CACCATAGAA ACTTCAAGAG CCTACAGACT GCTTTGCGTC
    CAACCCCAGT CAGGTTACCA GACTTTCCTA AGCCTACTGG ATATGGAGAT CATGAGTGTA
    GGAGCATGGG GTAATGGGAA CACGCCGAGC CAGTGCGTAT GGAGGGACAA GCATAGTGAC
    TTGCAAAAAT GGCTACACAC                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss51585449 NES14664943 PERLEGEN MM_PANEL2 f SNP C C C C C C T C C C C C C C C
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs36391182 SNP C C C C C C T C C C C C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss51585449 NES14664943 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:102240868 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Rr582225 regulatory region 582225 1710 bp proximal
Rr582226 regulatory region 582226 1810 bp proximal
Rr582227 regulatory region 582227 1857 bp proximal
Tssr30927 transcription start site region 30927 1324 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory