rs36391060 SNP Detail

Summary

• ID
  rs36391060
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:86770590 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTCTGGTGC GGAGAAAGGC TCTAGACTAC GGCGAATGCC
  ACACCCTCGT CCCGGCCGAT AGGACCCGCC CAGTCTCGGG GTGGAGACTG AGCCCAAGTT
  S
  CTGGTTGTCC CTTTGCCCAC AGGAAAGTCC CTCCCCGGAG AAGCGCAGCT AGAGCACGAG
  AATCGCCCCC AGCACCAGGA GGGGCCTGAG GCAGATCACG                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51749428	NES14799916	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	G	C	C	G	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36391060					SNP	C	C	C	G	C	C	G	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51749428	NES14799916	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:86770590 () rs orientation: forward

Symbol	Name	Function Class
Anxa4	annexin A4	mRNA-UTR
Cpgi17670	CpG island 17670	within coordinates
Rr633515	regulatory region 633515	35 bp distal
Rr633516	regulatory region 633516	within coordinates
Rr633517	regulatory region 633517	1358 bp proximal
Tssr61864	transcription start site region 61864	26 bp upstream
Tssr61865	transcription start site region 61865	7 bp upstream