rs36389993 SNP Detail

Summary

• ID
  rs36389993
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:18433861 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTTAAAAA AGGAAAGAGA
  GGGAGAGAGA AGAAAAGAAA TGAGGAAGTG GGTGAAGAGA GTATTAAAAA CGTTTTAAGA
  CAACATAAAA GAAGTTAAGA GAGGTCAGAG AATAGGGCAC ATTCTTTACA AAAGGGTAGA
  AGACTTCAAT CCCTTTACCT GATGCTGCTA CCAAGAGGCT GTCTGAGGCA CCGGGGCTAC
  R
  GGATGAGGCA CTAACAGGGT TTATGGAAGA GCAAAAGGCA ACGGTGGCGG GAATGACAAG
  GGAGCTGTCT GAACATGCGG GTTGGTTCAG TCCAGGGGTT CCAGCAGGCC AGGCACCCAC
  CTGAGACGTG GCCAGGGCCG AAACGGGACA GCCTGCAGGT GCCACAGTTA AATCTATGGA
  CGGTTTTGGT GGCAGCTGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	CAST/EiJ	WSB/EiJ
ss51250487	NES13802218	PERLEGEN	MM_PANEL2	f	SNP	G	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	CAST/EiJ	WSB/EiJ
rs36389993					SNP	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51250487	NES13802218	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:18433861 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cttnbp2	cortactin binding protein 2			Coding-NonSynonymous
				Intron
				Noncoding-Transcript-Variant
Gm40356	predicted gene, 40356			1580 bp upstream
Gm67618	predicted gene, 67618			1175 bp upstream
Rr626922	regulatory region 626922			685 bp proximal
Rr626923	regulatory region 626923			880 bp proximal