rs36389042 SNP Detail

Summary

• ID
  rs36389042
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:79997065 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTATTTTT CTTTTCTCTC
  TCTCTCTCTC TCTCTCTCTC TCTCTCTTTT TAATCTATAA ATGCATAGCG CGGACTTAAA
  CACACGCTGG AGGGATAGCT TTAAGACTGT CTCTAGCGTC TGCGTATCCA CAGCTTGAGA
  ACAGGGTATG AAATAAATAC CGTGTTTGCT TCTATTTCCT GATAATCTGA GCCACGCTTG
  R
  GTTCGGGTTG CCGTCAAGAA GATTGTTAAC ACTTGGCTAT GTGGGTGCAG GGGTGGGGTC
  CCTACTTTAT CAGAGGTGGC ACCGGAGGCT TGTTTGATCT TGGAAACTGC ATCCTGAATA
  CAGCTTCCAA ATTTCCAGTA GTCATTTGCC AGTTTTGTTT TTTTCAAGTG TGACTGGCTT
  TTTTTTTTTT TTTTTTTCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51705489	NES14809929	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36389042					SNP	G	G	G	G	G	G	G	G	G	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51705489	NES14809929	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:79997065 () rs orientation: forward

Symbol	Name	Function Class
Gm4409	predicted gene 4409	within coordinates
Lrrtm4	leucine rich repeat transmembrane neuronal 4	Intron
Rr632526	regulatory region 632526	1024 bp distal
Rr632527	regulatory region 632527	1163 bp distal
Rr632528	regulatory region 632528	429 bp distal
Rr632529	regulatory region 632529	within coordinates
Tssr57230	transcription start site region 57230	1137 bp downstream
Tssr57231	transcription start site region 57231	1085 bp downstream
Tssr57232	transcription start site region 57232	1052 bp downstream
Tssr57233	transcription start site region 57233	1003 bp downstream