rs36388404 SNP Detail

Summary

• ID
  rs36388404
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30752545 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATACATTTT AAATGTCCAA
  TCTGATTACA GTTCCCTTGT AAAAGCTATC GTGCAGAAGG ATTTCCTCGT GCCTCTAAAT
  AGGTCTGGCC ATCTACAGAG CTGTCTCCAG AGGTGACCTG GCCTCCTCTG TGTCCCCTTT
  GTTATTTTCA TGCTTTCTCT GTTCTTGTCT CCGAGCCACC ACCTCTTTAA AAGCATGCTG
  R
  TAGTAAATCG ATTCACTTCG TAAACATAAA AGAAAAGTCC GTCAGACAAT TACTGTTCAA
  GTCAAGAGTG GTTCAGCGGT GAACAAGAGA CAGCTCTTCT CTTCAGTGAC ATCGTAGCCT
  TCACCTCCGT GATTACATGG ACCAGGCTAC CAGGAAGAGG GGACATGGGA GGAGAGGAAC
  CCCCAGGAGA ATTAAGCCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51448728	NES14440212	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36388404					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51448728	NES14440212	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30752545 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Lrrc31	leucine rich repeat containing 31			Intron
				Noncoding-Transcript-Variant
Rr574814	regulatory region 574814			1671 bp distal
Rr574815	regulatory region 574815			1870 bp distal
Rr574816	regulatory region 574816			1424 bp proximal
Tssr32902	transcription start site region 32902			1369 bp downstream
Tssr32903	transcription start site region 32903			1459 bp downstream