rs36387100 SNP Detail

Summary

• ID
  rs36387100
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:68941576 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCAAAATG CCATCGTCAG
  TGGCTCAGAG CTCATCACCC AACTATGTCA AGGTACTAGG AAGCTAAGTG CAGCCTCTCT
  TTCCAGACTG CACTGAGCCA TCACTGTCCC TTCTCTCGGG ATGGCATCGC GATGGCCATT
  CAGCCAATGG CTTCACACAG CAGACAGAGC CACCCAGTAA GGGTCTTCAA AGCTGCTGCA
  Y
  GGGAAGTCAC CTCACCTTTG CAACTTTTCT ACTCTATGCA GGTGTCAGCC ACAGCTAGAG
  GAGCTGTGAC TTTCACTTTA GCCAAGATGC TCCGTGGATA CACACGCACG CTGGCACCCA
  CAGTGTGCTC ACTCAGAGAT AGGGTGTCTT GGTTTCCTCT GCTTACACAA CTGAAGCTGC
  CTGGGGACAC TTTTATTTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss50730516	NES14249510	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs36387100					SNP	T	T	T	T	T	T	C	T	T	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50730516	NES14249510	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:68941576 () rs orientation: forward

Symbol	Name	Function Class
Rora	RAR-related orphan receptor alpha	Intron
Rr682107	regulatory region 682107	within coordinates
Tssr90367	transcription start site region 90367	within coordinates
Tssr90368	transcription start site region 90368	46 bp downstream
Tssr90369	transcription start site region 90369	160 bp downstream