rs36385540 SNP Detail

Summary

• ID
  rs36385540
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113698020 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTCCCTGC TGCTACGGTG
  TTGGCGACAT TGCAGTGGCA GGCTACTCTG GATGTCTAGT TAGGGGCTGT TGCCAACAGG
  ACAAATAATT CAGAGCCCCA TGATATCCTC ACCTACTGTG AAGTTTTGGA GGAGAGTGGG
  CTCTGTGGGA TCTCTTGGTG CAGGTGAGGT GTGGGCTGGG TTGCAACTCC TGTGAGGAGA
  W
  AGACCATCTG GTAGAGGTAG CTGAAATCCC AACATCATAT TCATAGGCCT GTCACCCACC
  AGAACTTAGA AACCATTTAG CCCTGGGGCC CAGGGGTCTA AAGGTGAGGT GTTGTGGAAA
  CACTGCGGCC CTCCAGTCTG TGAGGACAGA AAGCCTGTGC ATGGTGACCA GGCATCGGCT
  GAAATATGAA GCTTGTCCAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51839623	NES14764961	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T		T	T	T		A
ss321911656	CHEV_6_113671053	CHEVERUD	SCREENING_POP	f	SNP										A				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36385540					SNP	T	T	T	T	T	T	T	T	T	A	T	T	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51839623	NES14764961	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113698020 () rs orientation: forward

Symbol	Name	Function Class
Ghrl	ghrelin	1179 bp upstream
Gm44033	predicted gene, 44033	1781 bp downstream
Rr636588	regulatory region 636588	49 bp proximal
Tssr62470	transcription start site region 62470	1591 bp upstream
Tssr62471	transcription start site region 62471	1176 bp upstream