rs36383284 SNP Detail

Summary

• ID
  rs36383284
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:85239408 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAAGCAAA GCAAGCAAGC
  ACTTTCACGA GCTGAGCTAG CCCCCAGCCC AAGGCCAGAG CTTCCTTCCA TGTATCTGTC
  GGTCTCCAAT GACATATGTG TTTGCCCTTT TACACATCTC TGAATGAAAA TAATATATGC
  ATCTGATAAC TGAAGAAAAA AAAAGAAAAA GAAAAGAAAA GAAACCCATC TCTCCCAGCC
  R
  ACACTGAGTA GTAGTACCAG GGCCCAGGGC TTGCCTCTCT CACCCACCCA CTGAATTCTC
  AGTATGTGGT AAAATGAGTC TGGACTTTGT GGTGCTTCTA AAATAAATCA AAGTGAATGC
  TGTCTGAGGC ATGAAGGCAA ACAAAAGCCT TGCAAAGCAC TGCATCTACC TTTGCAAACA
  CTGCACTTGC CCAGGTCTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ
ss51356235	NES13744213	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A	A	A	A	A	G		A	A
ss133351529	ENSMUSSNP4799522	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ
rs36383284					SNP	A	A	A	A	A	A	A	A	A	A	A	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51356235	NES13744213	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:85239408 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr824	regulatory region 824			194 bp proximal
Rr633161	regulatory region 633161			471 bp proximal
Rr633162	regulatory region 633162			581 bp proximal
Rr633163	regulatory region 633163			712 bp proximal
Rr633164	regulatory region 633164			890 bp proximal
Sfxn5	sideroflexin 5			Intron
				Noncoding-Transcript-Variant