GAGCATGTCT TTAATCTACC TCGATGGAAA ATACTCCGAG GCGGATCACA AGCAATAATA ACCTGTAGTT TTGCTGCATA AAACCCCAGA TGACTACCTA TCCTCCCATT TTCCTTATTT GCCCCTATTA AAAAACTTCC CGACAAAACC GAAAATCTGT GGGAAGTCTT GTCCCTCCAA TTTTACACCT GTTCAATTCC Y CTGCAGGACA ACGCCCACAC ACCAGGTTAG CCTTTAAGCC TGCCCAGAAG ACTCCCGCCC ATCTTCTAGA AAGACTGGAG TTGCAGATCA CGAGGGAAGA GGGGGAAGGG ATTCTCCCAG GCCCAGGGCG GTCCTCAGAA GCCAGGAGGC AGCAGAGAAC TCCCAGAAAG GTATTGCAAC ACTCCCCTCC CCCCTCCGGA Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss51843812 | NES14766059 | PERLEGEN | MM_PANEL2 | f | SNP | C | C | C | C | C | C | C | C | C | C | C | C | C | T | C |
SNP Consensus Information | ||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
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rs36381569 | SNP | C | C | C | C | C | C | C | C | C | C | C | C | C | T | C |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss51843812 | NES14766059 | PERLEGEN | MM_PANEL | f | SNP | C/T |
Location: Chr6:113052927 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi17829 | CpG island 17829 | 95 bp proximal | ||||||
Gt(ROSA)26Sor | gene trap ROSA 26, Philippe Soriano | within coordinates | ||||||
Rr379953 | regulatory region 379953 | within coordinates | ||||||
Rr407325 | regulatory region 407325 | within coordinates | ||||||
Rr636448 | regulatory region 636448 | 1324 bp distal | ||||||
Rr636449 | regulatory region 636449 | within coordinates | ||||||
Rr636450 | regulatory region 636450 | 422 bp proximal | ||||||
Rr636451 | regulatory region 636451 | 1336 bp proximal | ||||||
Rr636452 | regulatory region 636452 | 1348 bp proximal | ||||||
Rr636453 | regulatory region 636453 | 1684 bp proximal | ||||||
Setd5 | SET domain containing 5 | 1399 bp upstream | ||||||
Tssr58166 | transcription start site region 58166 | 1388 bp upstream | ||||||
Tssr58167 | transcription start site region 58167 | 1421 bp upstream | ||||||
Tssr58168 | transcription start site region 58168 | 1489 bp upstream | ||||||
Tssr58169 | transcription start site region 58169 | 1601 bp upstream | ||||||
Tssr58170 | transcription start site region 58170 | 1665 bp upstream | ||||||
Tssr62428 | transcription start site region 62428 | 351 bp downstream | ||||||
Tssr62429 | transcription start site region 62429 | 1215 bp downstream | ||||||
Tssr62430 | transcription start site region 62430 | 1271 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/18/2025 MGI 6.24 |
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