rs36381569 SNP Detail

Summary

• ID
  rs36381569
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113052927 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCATGTCT TTAATCTACC
  TCGATGGAAA ATACTCCGAG GCGGATCACA AGCAATAATA ACCTGTAGTT TTGCTGCATA
  AAACCCCAGA TGACTACCTA TCCTCCCATT TTCCTTATTT GCCCCTATTA AAAAACTTCC
  CGACAAAACC GAAAATCTGT GGGAAGTCTT GTCCCTCCAA TTTTACACCT GTTCAATTCC
  Y
  CTGCAGGACA ACGCCCACAC ACCAGGTTAG CCTTTAAGCC TGCCCAGAAG ACTCCCGCCC
  ATCTTCTAGA AAGACTGGAG TTGCAGATCA CGAGGGAAGA GGGGGAAGGG ATTCTCCCAG
  GCCCAGGGCG GTCCTCAGAA GCCAGGAGGC AGCAGAGAAC TCCCAGAAAG GTATTGCAAC
  ACTCCCCTCC CCCCTCCGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51843812	NES14766059	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36381569					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51843812	NES14766059	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113052927 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17829	CpG island 17829	95 bp proximal
Gt(ROSA)26Sor	gene trap ROSA 26, Philippe Soriano	within coordinates
Rr379953	regulatory region 379953	within coordinates
Rr407325	regulatory region 407325	within coordinates
Rr636448	regulatory region 636448	1324 bp distal
Rr636449	regulatory region 636449	within coordinates
Rr636450	regulatory region 636450	422 bp proximal
Rr636451	regulatory region 636451	1336 bp proximal
Rr636452	regulatory region 636452	1348 bp proximal
Rr636453	regulatory region 636453	1684 bp proximal
Setd5	SET domain containing 5	1399 bp upstream
Tssr58166	transcription start site region 58166	1388 bp upstream
Tssr58167	transcription start site region 58167	1421 bp upstream
Tssr58168	transcription start site region 58168	1489 bp upstream
Tssr58169	transcription start site region 58169	1601 bp upstream
Tssr58170	transcription start site region 58170	1665 bp upstream
Tssr62428	transcription start site region 62428	351 bp downstream
Tssr62429	transcription start site region 62429	1215 bp downstream
Tssr62430	transcription start site region 62430	1271 bp downstream