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rs36381569 SNP Detail
Summary
  • ID
    rs36381569
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr6:113052927 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GAGCATGTCT TTAATCTACC
    TCGATGGAAA ATACTCCGAG GCGGATCACA AGCAATAATA ACCTGTAGTT TTGCTGCATA
    AAACCCCAGA TGACTACCTA TCCTCCCATT TTCCTTATTT GCCCCTATTA AAAAACTTCC
    CGACAAAACC GAAAATCTGT GGGAAGTCTT GTCCCTCCAA TTTTACACCT GTTCAATTCC
    Y
    CTGCAGGACA ACGCCCACAC ACCAGGTTAG CCTTTAAGCC TGCCCAGAAG ACTCCCGCCC
    ATCTTCTAGA AAGACTGGAG TTGCAGATCA CGAGGGAAGA GGGGGAAGGG ATTCTCCCAG
    GCCCAGGGCG GTCCTCAGAA GCCAGGAGGC AGCAGAGAAC TCCCAGAAAG GTATTGCAAC
    ACTCCCCTCC CCCCTCCGGA                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss51843812 NES14766059 PERLEGEN MM_PANEL2 f SNP C C C C C C C C C C C C C T C
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs36381569 SNP C C C C C C C C C C C C C T C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss51843812 NES14766059 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr6:113052927 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi17829 CpG island 17829 95 bp proximal
Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano within coordinates
Rr379953 regulatory region 379953 within coordinates
Rr407325 regulatory region 407325 within coordinates
Rr636448 regulatory region 636448 1324 bp distal
Rr636449 regulatory region 636449 within coordinates
Rr636450 regulatory region 636450 422 bp proximal
Rr636451 regulatory region 636451 1336 bp proximal
Rr636452 regulatory region 636452 1348 bp proximal
Rr636453 regulatory region 636453 1684 bp proximal
Setd5 SET domain containing 5 1399 bp upstream
Tssr58166 transcription start site region 58166 1388 bp upstream
Tssr58167 transcription start site region 58167 1421 bp upstream
Tssr58168 transcription start site region 58168 1489 bp upstream
Tssr58169 transcription start site region 58169 1601 bp upstream
Tssr58170 transcription start site region 58170 1665 bp upstream
Tssr62428 transcription start site region 62428 351 bp downstream
Tssr62429 transcription start site region 62429 1215 bp downstream
Tssr62430 transcription start site region 62430 1271 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory