rs36381417 SNP Detail

Summary

• ID
  rs36381417
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:57511023 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGGGGGAAG TGCAGGCCAG
  TGCAAGCAGG CAGAGGCCTT TAGTGGTCAA GCAACATCAT CGGCCCGATT TTTAACACTC
  TTAAACTCCA AATTTCTTTA CCACCATCAA CAACAAAACC CCAGTGCACC CCAATAAACA
  ACTAAAATCA TCTGAAAACC TCAGAAATGT ATTTTAGGAA ATCCGCACTC TTGATGCCTT
  Y
  ATCGCCTTTT AGGAGGAAAG GAAATGTTAG TTTACTGGAG AAAAGAAAAC AACAAAACGG
  TCAATAACTC CCTTCGGTTG TATGTGAGAG TCTGTTTTCA TAGGCGAAGT GAGAATACAG
  TATTGAAAAG TAAGTGTTAC TCAACTCTGT GAAGGGGGTG GGTTGATGTA GACAAGGAAA
  AAGAGACTCG GATTGCAAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51315123	NES13763473	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36381417					SNP	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51315123	NES13763473	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:57511023 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17483	CpG island 17483			717 bp proximal
Cpgi17484	CpG island 17484			1493 bp proximal
Gm45193	predicted gene 45193			within coordinates
Ppm1k	protein phosphatase 1K (PP2C domain containing)			Intron
				Noncoding-Transcript-Variant
Rr399669	regulatory region 399669			1379 bp upstream
Rr631141	regulatory region 631141			79 bp proximal
Rr631142	regulatory region 631142			1378 bp proximal
Tssr61156	transcription start site region 61156			1330 bp downstream
Tssr61157	transcription start site region 61157			1372 bp downstream
Tssr61158	transcription start site region 61158			1384 bp downstream
Tssr61159	transcription start site region 61159			1439 bp downstream
Tssr61160	transcription start site region 61160			1461 bp downstream