rs36379907 SNP Detail

Summary

• ID
  rs36379907
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:69627125 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCTAACTT GCCTGCCAAC
  AGCCACAAGA TGAGGTACAT TTTTTTTTTT TTAAATAAGA GAGAACATAG TCCTATTGTT
  AGAAGTAGTT TTCTATATAT TCCTTTCCCA GGCCCAAATG TTACACGATG ATTAATCCCA
  AAGATGGTTG TGAGTAGTTC CTCTCTCCAT ATGAAGAGAG GAGGTACCAT ATGCTTCCAC
  R
  TCATACTAAC CGTAGATTCG TTGCTATGGG TGGGTGATGG TATTATTATT ATAGAACTAT
  CTTTTTTTGT TTTTTTTTTT TTGTTTGTTT GTTTTGGTTT TGTTAGATAT GGTTTCTCTG
  TGTAGCCTTG GCTGTCCTGG AACTCACTCT GTAGACCAGG CTGGCCTCGA ACTCAGAAAT
  CCACCTGCCC CTGCCTCCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50978992	NES13929410	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36379907					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50978992	NES13929410	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:69627125 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13262	CpG island 13262	1921 bp proximal
D3Mit22	DNA segment, Chr 3, Massachusetts Institute of Technology 22	1380 bp distal
Gm66407	predicted gene, 66407	within coordinates
Rr578219	regulatory region 578219	1703 bp proximal