rs36379567 SNP Detail

Summary

• ID
  rs36379567
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:112186570 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGCCACAC TTGCCCACTG
  AGGTGCAGGG AGAGGAAGAA CAGCAGTGGT GTAAAGTGAC AGCAGGATCC TACCTCTAGT
  ATCCTCACTC GTGCAGGCAA ACACTCTTGG GGAGACCCCA AAATGGCCAG GATGTGAGGC
  CAATGCTTGT TCTGACCCTG CTCCTGTAAC AGAGAAGACC TTATGATACA GACTTGAGCT
  S
  CATCCCAGAG ATAGCTGGCG GAGTGCAGAA GAGAGTCCAG GAGAAGTGAC ATGAAAAGTC
  ACATCATGGC ATTTAAAAGA TTAATTCAAG GCCACTTAGA GAAATGACTG CCGAGCAACC
  AGAATGGTGA CAGCTGAGAC CTGGGCACAG GGATATGGAA ATCCCACAGG ATTTGGGGAT
  CCTAGTGCTC TGGGAAACTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51832917	NES14763394	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36379567					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51832917	NES14763394	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:112186570 () rs orientation: forward

Symbol	Name	Function Class
1700054K19Rik	RIKEN cDNA 1700054K19 gene	1099 bp upstream
Rr636307	regulatory region 636307	667 bp distal
Rr636308	regulatory region 636308	628 bp distal
Rr636309	regulatory region 636309	584 bp proximal
Rr636310	regulatory region 636310	1085 bp proximal
Rr636311	regulatory region 636311	1545 bp proximal