rs36379008 SNP Detail

Summary

• ID
  rs36379008
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:142095728 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCCCCAGG AAATCAGACA
  CTCTGTTCTG GACCCCAAGA GCACCTGCAC ACATACCTAC CGGTACCTGC ATACATACAC
  ATTTTAAAAT TACAATTTTT AAAAGGACAT CTTGAACAAG AAGGCCTTAA ACGTGTGTCA
  TTCCCCTGGT CAGTGAAGAA GCAGAAAGAG GAAAATGTGT ACTTCCATGG AGGATCCCAC
  W
  TTAAAATTAC CTGTTCCATG CTGGACTGTT GCAGAGAATA TTTAATTGCA ATCTGGAGCC
  TCTACCGGCC TTGGGTCATT CGGTTCCCCG ATAAAAGACA CACAACTTAT ATTATTTACA
  ATAGCCTTAG TCAGCACTAG AGCTGGGCAG CGATATCTAC CCTCTAAGGT ATTAGAATCT
  ACTTTCCTAT CTGTAACCCG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51529083	NES14869765	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36379008					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51529083	NES14869765	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:142095728 () rs orientation: forward

Symbol	Name	Function Class
D330005C11Rik	RIKEN cDNA D330005C11 gene	within coordinates
Sdk1	sidekick cell adhesion molecule 1	Intron