rs36375420 SNP Detail

Summary

• ID
  rs36375420
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:22198488 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACATTTTT GAATCAGTGG
  GCCAAATGAA TTTATTGTTA GATCTAGTCA AAATAATTGT GTTATTTTTT TTCATAAATA
  AAATAAAAAG CCTAACTACA TTAAAAAGCA CTACTTGGAA GATATTTGCT TAGTCCCAGT
  GTCTATGCTA AAGGCCTTTC CTAAGATTAT TGCGCTGTTC ACTTTAGGTA AATGCTGATA
  R
  TAGCTTAAAA ACAGAGCTAT TTTGTTTGGA GACTGAATGA ACCTTAACAA TCTATAAAGT
  CAGCTTTGGA ATTCATGAGG TGTACTTTAG TTTCTGTTAG TGGAATGTCA GTCAGTCTGT
  CCCTGCCACC TTCTGGAAGT TGTGTGAAAA GGCTGTCATG AGAATAGCAG CCAGCCACTG
  CCTCTTCAGC CCTTGTGTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51433226	NES14434308	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36375420					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51433226	NES14434308	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:22198488 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr574213	regulatory region 574213			611 bp distal
Rr574214	regulatory region 574214			858 bp distal
Rr574215	regulatory region 574215			7 bp proximal
Rr574216	regulatory region 574216			120 bp proximal
Tbl1xr1	Tbl1x/y related 1			Intron
				Noncoding-Transcript-Variant