rs36368617 SNP Detail

Summary

• ID
  rs36368617
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:97715710 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGGTAGGC CCTGATTAAT
  GTGTCTTGTC TGCTTGTCTT GGTGGCCTTT GGCAAATGGC TCCATTGCAC TAAACTTTGG
  TGTCCTTGCA TGTAAAATGG GGATTAGAAG GCATGCTAAA GCTAAGCTTT GGCCCCTTAG
  TGAGGCTCCA GTGACTCCCC ATGTCCTGAA ATGAGTTTTA AGTCTTTGTT CATGCTTTCT
  Y
  GGCCCAGAAG ATCTCTCTGC TTCCCCATCC GTTCATCCTT TCCCATACAA CAGGCCAACT
  CTGAGTCCCA CTGCAATGAC TCCATCACCC AGCTCTTCTC ACTGTCTCCA CAGTTTCATT
  TGCTGCTGCC CAGCCTCGAA TGAGCCTGCA GATCCATGAG CCACGAGTCC CTCAAGGGTT
  AATAAGGCCA CAGTGCCTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss51376271	NES13728270	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs36368617					SNP	C	C	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51376271	NES13728270	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:97715710 () rs orientation: forward

Symbol	Name	Function Class
Rr399782	regulatory region 399782	1463 bp upstream
Rr635214	regulatory region 635214	1332 bp proximal
Rr635215	regulatory region 635215	1559 bp proximal
Rr635216	regulatory region 635216	1848 bp proximal