rs36367547 SNP Detail

Summary

• ID
  rs36367547
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:116645208 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGAGAGGA AGAAGAGAAA
  AGAGAAGAGA AGAGAAGAGA AGAGGAGGGG AGGGGAGGGG AGGGGAGGGG AGGGGAGGGG
  AGGGGAGGGG AGGGGAGGGG AGGGGAGGGG AGGGGGTAGG GAGAAACAAT AATCAGAGAG
  AAAGGGAGGA GACCAAATGG AGCACACACT TGCAAGACAG GTATGGGACT AGTTTGTGGC
  R
  TCTGACTCAT GGCCTGCCTT AGTTTACAGT ATCTCTACTC TCCCTCAGAA GGAGAATCCG
  TCCTCTCTTT TACTTCACAG TAGAAGCATT TGCACGTAGA ATTTCCTTTA AGTTAAGCAG
  TGTAGCAGAA AGGCCTTCTT CCTCAGGGCT GGGAGCTACT AAGACCTGGG TGACTGCAGA
  TGCCTCCTCT CCGAGCCTCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss51859270	NES14882426	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	G	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs36367547					SNP	A	A	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51859270	NES14882426	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:116645208 () rs orientation: forward

Symbol	Name	Function Class
Rassf4	Ras association (RalGDS/AF-6) domain family member 4	Intron
Rr637228	regulatory region 637228	344 bp proximal
Rr637229	regulatory region 637229	915 bp proximal
Rr637230	regulatory region 637230	1737 bp proximal
Tssr58382	transcription start site region 58382	1886 bp downstream
Tssr58383	transcription start site region 58383	1138 bp upstream
Tssr58384	transcription start site region 58384	1176 bp upstream
Tssr62604	transcription start site region 62604	120 bp downstream
Tssr62605	transcription start site region 62605	154 bp downstream