rs36367360 SNP Detail

Summary

• ID
  rs36367360
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:86994398 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTCCTAGG AGTTGGGATT
  ACAGATGTGT CCCACTTTAC CCAGCTTGAA CTCCGATTTT CAAGAACCAC GGAAAGGTGC
  TCCTTAAATT TCAAAAGAAA GCATAGCCAA GGTTCTAGAT TTCCATTCAG AACTATAAAT
  TATTGCAGTT GTCAGATATG AGGTGACATT TAAAGTCAAT GAAGACAGTT TCTAAGTTCC
  Y
  GAGAGCTGGG TAATGTGCCC GGCTCTCAAA ACCCGGGCAC GGTAGGGCCA GGCCCAACAC
  TCAGGAGGCA GAGGCAGGAG GAGCTCTGAA ATTGAGGCCA GCCTGGTCTA CTGAAAGAGT
  TTCAGGACAG CCAGGGCTAC ACAGAGAAAC CCTGCCTCAA AGAAAATAAA CAAATAAAAA
  CAAACAAAAA GCCCCAAAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
ss51746377	NES14795473	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	T	C	C	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
rs36367360					SNP	C	C	T	T	C	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51746377	NES14795473	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:86994398 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nfu1	NFU1 iron-sulfur cluster scaffold			Intron
				Noncoding-Transcript-Variant
Rr633575	regulatory region 633575			617 bp distal
Rr633576	regulatory region 633576			187 bp distal
Rr633577	regulatory region 633577			269 bp distal