rs36365574 SNP Detail

Summary

• ID
  rs36365574
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:69663153 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTTG CTAAACAAGT TTCACTTTGA
  Y
  GTAGTTAACA GTCATACATT GTTTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
ss50978680	NES13928542	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	C	T	T	T	C		T	T	T
ss135271359	ENSMUSSNP4905703	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
ss320793810	CHEV_3_69559742	CHEVERUD	SCREENING_POP	f	SNP										T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
rs36365574					SNP	C	C	T	C	C	T	T	T	C	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50978680	NES13928542	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:69663153 () rs orientation: forward

Symbol	Name	Function Class
9530051E23Rik	RIKEN cDNA 9530051E23 gene	within coordinates
Rr375162	regulatory region 375162	within coordinates
Rr578222	regulatory region 578222	356 bp distal
Rr578223	regulatory region 578223	463 bp distal
Rr578224	regulatory region 578224	594 bp proximal
Rr578225	regulatory region 578225	831 bp proximal