rs36364063 SNP Detail

Summary

• ID
  rs36364063
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:45385720 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTTTTTCA CACTTCTTTT
  ATTGCTTCTA GTATGTTGAC TTTTTTCCAC TAAAAACCTT TAAGAGGAAG AAAAATTAGT
  ATAAAACTTG ACCTCTTCTC TTTCTTTAAT GAGAAGCTTG AAAATGAAGT TTCCACGTAG
  GGAGCAAACC CATGTGGTAC TCATAGAAGA CCATCAGAGG ATAATCATGG CTTTGAGGGT
  Y
  ATAACTACAT AGCTAGAAAA TCTTACATGT AAAATCCCTA TTAATGTAAT TTGATTATTA
  CTATGTCTCT GCTGGAAAGA GTTAATATGT TTGAGGACGA ATCATATTTT GAATTAATGA
  TCAGAACTGC AAATGTAATC AATGTATTTT TTTTCATAAT AAAGCAACCA CAAAAATCAC
  ACCAAATACC ATTCATTTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51513073	NES14696146	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	C	T	T	C	C		T	C	C
ss135075824	ENSMUSSNP123139	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs36364063					SNP	T	T	T	T	T	T	T	C	T	T	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51513073	NES14696146	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:45385720 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
1700027H10Rik	RIKEN cDNA 1700027H10 gene			within coordinates
Pcdh10	protocadherin 10			Intron
				Noncoding-Transcript-Variant
Rr576058	regulatory region 576058			454 bp proximal
Tssr29010	transcription start site region 29010			1562 bp upstream