rs36362828 SNP Detail

Summary

• ID
  rs36362828
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:121889049 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCATTATTA TTCAACACAC
  TAGCCCTCAC CCCCAGGTGT TGTTGGAACA ATGGAACAGG AAACCAGGAG AGCTAAACGT
  TGGGAAGTTA TTAGTCAAGT GATGGTGACT TTCATTGAAA CCAGCTGGGT AGAAACCATT
  GCCCTGGTGG CTTCGCAGGG CATTTGCCCT GGTCCTTGTG AGTCCTCATT CTTCAACCTC
  R
  GCTTTTTATT CATTTCAATA CTCTATCTAT CTATCTATCT ATCTATCTAT CTATCTATCT
  ATCTATCTAT CTATCTATCT ATCTATCTAA CCACCCACCC CATCCACCCA TCCATCCATC
  CATCCATCCA TCCATCTATC CATCTATCCA TCTATCCATC TATCCATCTA TCCATCTATC
  TATCTATCTA TCTATCTATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51022010	NES13908053	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36362828					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51022010	NES13908053	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121889049 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Abca4	ATP-binding cassette, sub-family A member 4			Intron
				Noncoding-Transcript-Variant
Rr584229	regulatory region 584229			246 bp distal
Rr584230	regulatory region 584230			1448 bp proximal