rs36361979 SNP Detail

Summary

• ID
  rs36361979
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:31093134 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTGTGCTC CTGGCTCTTC
  CTTCTATCAC TGTTAATGCT TTGTGTTTTG TTTTTATCTT AGCCTTGTAG AAACAATTAA
  GCCACAGCTC TGGGTAAGAG GCAGAGTGGG AGAGGTGAGA GACGAGGCGA TCAGCCCTGG
  ATTTCCTCCG TCGCTAGTCC ACCTTTCCGC AATGCTTACA CACGGGAGGA CAAACAGAAG
  Y
  AGAGCAATCT CCGAGGGGAT GTTTATGGCA GATTAGGGAC AGTCAGGGAA AGCAAGCAGA
  AATTCTCCCA AGGTGGAGTA TTAAGCAACA CCCAGCATCA TCCTACAAAG CATGGTTCAT
  ATCCACTGAT TAGACCGAGA ATTAGGCTCC AACAGATGCA TGGTGAAGCT GACTCTGCCC
  CCTGCCTAGG CTACAACTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51260121	NES13794004	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36361979					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51260121	NES13794004	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:31093134 () rs orientation: forward

Symbol	Name	Function Class
Gm56937	predicted gene, 56937	1774 bp downstream
Lncpint	long non-protein coding RNA, Trp53 induced transcript	within coordinates
Rr627889	regulatory region 627889	924 bp distal
Rr627890	regulatory region 627890	214 bp proximal
Tssr60155	transcription start site region 60155	1379 bp upstream
Tssr60156	transcription start site region 60156	1148 bp upstream
Tssr60157	transcription start site region 60157	1095 bp upstream