rs36357578 SNP Detail

Summary

• ID
  rs36357578
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:117232491 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCATGGAGA TGGGAATCTG
  TGCTAGGCTG CTCCACTTCC CTGGCCTTGT TCTGAGCCTG AAGTGGAAGG TTCTATTGTT
  AGGGTGGGAT TCAACATCTG CTAATCGAAC CTGTTTTTAA TTTTTAAACA CATTCTTGTT
  CCTGTTGGTA TCTATTCTCT CATGAAAACA ATGCAGATGC TGAACCGACG ATAATAAAAA
  K
  GATTTAGATT GACATGCCTT CTGTTTGTGA TTGCTGCAGA CCACACAAAG ATGGTGTCCT
  GCAGATACAC GGTTACCCAC CATAGTTTGG AGACGTCTGC CACCTCGTGG TAGCAGTCGG
  AAATGCTGAA TAACACTGAA TCGTAGAAAT TAGGAAGTAG AAAAACACCG ACCACCCCAG
  TAAATACACT CTTCCCTTTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51011760	NES13912407	PERLEGEN	MM_PANEL2	f	SNP	T		G	G	G	G		G	G	G	T	G	G
ss135690357	ENSMUSSNP861522	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs36357578					SNP	T	T	G	G	G	G	G	G	G	G	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51011760	NES13912407	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:117232491 () rs orientation: forward

Symbol	Name	Function Class
Rr583844	regulatory region 583844	within coordinates
Rr583845	regulatory region 583845	94 bp proximal
Rr583846	regulatory region 583846	1415 bp proximal