rs36356408 SNP Detail

Summary

• ID
  rs36356408
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:8103389 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAATT ACCCAGATAC CTGTGTGGGA
  Y
  GCCTGTCATA TTATATTCAA TTCAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss51554667	NES14866356	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C			C	T		C
ss132961553	ENSMUSSNP7126651	ENSEMBL	ENSEMBL_Sanger	f	SNP					C
ss321735869	CHEV_6_8053389	CHEVERUD	SCREENING_POP	f	SNP						C			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs36356408					SNP	T	T	T	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51554667	NES14866356	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:8103389 () rs orientation: forward

Symbol	Name	Function Class
Col28a1	collagen, type XXVIII, alpha 1	Intron
D6Mit348	DNA segment, Chr 6, Massachusetts Institute of Technology 348	1718 bp proximal
Rr626348	regulatory region 626348	1539 bp proximal