rs36355170 SNP Detail

Summary

• ID
  rs36355170
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:138859457 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGATGGGC TCCTTCCATG
  TGATTCCGTC TTACTGGAGG CCTGCTCTAC CAATTGTCAC TGGGTTCTTA GTCACATTTG
  CAACCTGGAT ACTCTAACAC GTGTAAGGGT AGGTCATGTC CCTAGGCTAC ACTGCCCTCC
  ACACTCTCTA TGGGTCACAG GTTCCCACTG GGACATAGCA TAGTCACTAG AAAGGGTGGA
  Y
  CCCAGAATAT GCATTCCTTA AACGTTCTTT TTTTTTTTTT CATTTCAAGA TACTTTATTT
  TCAAAATGGA TCACAACATA AGCTTTTGGC CCATCTGCCA ATGTACAAAC TACACATGCT
  TGCTCTGCAG CTGAGGGGCA TCACCAATCC ACACACGAGC CTTTGGGGTG GGTGTGTAAA
  GGCCCCATAA ATGATTCTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51203484	NES13817199	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36355170					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51203484	NES13817199	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:138859457 () rs orientation: forward

Symbol	Name	Function Class
Gm31891	predicted gene, 31891	within coordinates
Rr623123	regulatory region 623123	1311 bp proximal