rs36354243 SNP Detail

Summary

• ID
  rs36354243
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:91165462 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGACAGTTC AGCAGAATCA
  ACATGCCCAT GGAACCCTAT GGAAGAGCCT TCTAGTCCAG GAGGGCTTCC TGAAGGAAGA
  GGCACACGAG CTAAGCCTTA AAGAGTAAAT AAAGTGTTCC TGTGTTAGGA ACATTGATTG
  ATTGTGGTAG AAGGAACAGC ACATGTAAAA TTCCACAGGC ATGAAGAAGC TATGTAGATA
  Y
  CTATAGCTAA GTACTGGAGA TTCTGAGGAC AAGAGGAAAG GTGGGGTTTT CCTAAAGTCT
  TTTTCCTTAC TTTAGTCCCT TCTAATGGTG GCCTTTCTGT CCCTACTGTC TCAAAGCTAC
  TTCCTCTCGG GCAGCAGGTG TGGTGTGGTG TGGGGGTCAG TAGACCTAGG TCCTTCCCTA
  GTTCTGCTGG TCACTAGTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51363863	NES13733373	PERLEGEN	MM_PANEL2	f	SNP	T			T	T	T	C	T	T	T	C		T	C	T
ss133382167	ENSMUSSNP5048886	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T					T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36354243					SNP	T	T	T	T	T	T	C	T	T	T	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51363863	NES13733373	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:91165462 () rs orientation: forward

Symbol	Name	Function Class
Rr634418	regulatory region 634418	1738 bp distal
Rr634419	regulatory region 634419	1272 bp distal