rs36352825 SNP Detail

Summary

• ID
  rs36352825
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:143913160 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATACATCA TATGGGAAGA
  TTTCCATACC TGTACAAGCC CCTTATTGTA CATAAAAAAA AAAGGTCTTT ATTTTCTTTT
  CCTTTAAAAT GATTTAAAAA AAAACAAAAA CAAAAACCAG CACACATATC ATACAGAATC
  ATGGTGAGTT GTGGTATTTC CTAAAGTATG AACATGAAAA TGAATATGTA ATTCTAAAAT
  R
  AAATGTTGTA AATTAAGGGG GAATGTGCTC AGGTATCACT AAATGACTCT CTAAGGGTCT
  GGGTGGTCTT TGTGGAGGGA AGGAAAGGGG AAGGGTCGGA AAGATGGGAC TTTGAACTTT
  TGTCTCCAGG CTACCCCGGG GCCTAAACTT TTAGAGGTGG TTTTAGTGTT TTGATTCGGA
  TTGTGTGTGA AGTCTGCACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	WSB/EiJ
ss51655511	NES14643416	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	A	G	G	G	G	G
ss136029280	ENSMUSSNP1335716	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	WSB/EiJ
rs36352825					SNP	A	A	G	G	G	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51655511	NES14643416	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:143913160 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13895	CpG island 13895	1439 bp distal
Rr398096	regulatory region 398096	1619 bp downstream
Rr586602	regulatory region 586602	1689 bp distal
Rr586603	regulatory region 586603	65 bp proximal
Tssr35972	transcription start site region 35972	1869 bp upstream
Tssr35973	transcription start site region 35973	1414 bp upstream