rs36349256 SNP Detail

Summary

• ID
  rs36349256
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:143447610 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGATAGGTC TTCATGCTTG
  TCTAGGGAAT GCTTGTACCC AGTAAGCCAT TCCTCAGGTC CCAAATTCCA CATATGTTTA
  AAAATGGTAG AAAATCTCAG ACACTAACAT CTTATTAGAA GTATTTGATG AATGCTTAGT
  ATTTATATAC TTTAGTGTTG CAGGGGGAAA AAAAGAGCTA CTCTTACTTC TAAGTGGTTC
  Y
  GAGCAAGTAA AAACATCCCC AAAACTTAGT TAAGCATCAG ATTTTAAACT TAAGCTCCCA
  TGTGCCTTAA TTTAAACCAA AGAGTTACTT TTTCCATCCC CATATAGAAA CTGCCAGCTC
  TCATGCTGGA GTGCACAGAC CATCACTGGT AAGCAGTCTG TTTTCAAAGC TTCTCTCACA
  ATTTTGAGTC AGACTGTCGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51661418	NES14645707	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36349256					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51661418	NES14645707	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:143447610 () rs orientation: forward

Symbol	Name	Function Class
Gm33867	predicted gene, 33867	1429 bp upstream
Gm42705	predicted gene 42705	1528 bp upstream
Rr586558	regulatory region 586558	1038 bp proximal
Rr586559	regulatory region 586559	1127 bp proximal
Rr586560	regulatory region 586560	1539 bp proximal