rs36341998 SNP Detail

Summary

• ID
  rs36341998
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:88323833 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCACTGGC TTCACAGAGG
  TACCCAGAGT AATTACTTGG ACCATACCCT ACCACATTGC CCACTGAAGC CAAAGCATGT
  TTTCAATACA GAAAGAAGGC CAGATAGTGC ACAGAATAGA TGCTGCTAGG TGCCACACAG
  CACTCATGCC TGTACTGGGC ACAGTCCAGC ACTAGATAGA TGTTGACCAG CTCAGCATTG
  Y
  TGCACCAAGG CTACTTCTAC TTGGTCCCCA AACCCTGGCT GCCACTCACT TCCCAACAGA
  GAAGCCACTT CATGTGCCAA ATTGTAGTGC TGCCAGATCT CAGGTTACTG TCAGCTCACA
  TTTTACTTGG TGACAAATGC CATATGCCAT GGCTGAAGGA GGGCACAGCA GCCCCAAAGC
  TATGGTGCAA AGTTTGTGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51359565	NES13742161	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36341998					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51359565	NES13742161	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:88323833 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Eefsec	eukaryotic elongation factor, selenocysteine-tRNA-specific			Intron
				Noncoding-Transcript-Variant
Rr633876	regulatory region 633876			664 bp proximal