GCTTACTGAA AGGCGTTTGT TAGACATAGG AGTAAGTTTG CGAGCCGTTT TTTTTGAGGG TGCCCTTTGA TCTTGCCCGT CTTCCCATTG ATTTGTTTGC TGCATGTTTA CTGAATGCAC GAGCAGCAGA CTCGTCAGGA AGAGCAACCC TCCTCTCTGT ACTAATCGTG TAGTAAGTTT GAGACAGGAT GGGTCTTACG Y ATGTGGTATT TTGCATTTCT TTTTCATTGA TACCTTAGTG GTAAGAAATT ATCCTGGTGA GGAACTGACA CTCATAACAC CCACCCCCTT CTGAAACTTA TTCTGCTGGT TTTTATCTTT TCAGAAAAAA AAAAGGTATA AATGATCAGC AGATGTTGTT TGTTTCTTAA TTGTGACTCT CTCGATAAGA GTCCATTTAT Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss51817513 | NES14771504 | PERLEGEN | MM_PANEL2 | f | SNP | T | T | T | T | T | T | C | T | T | T | T | T | T | T | T |
SNP Consensus Information | ||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
||||
rs36338400 | SNP | T | T | T | T | T | T | C | T | T | T | T | T | T | T | T |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss51817513 | NES14771504 | PERLEGEN | MM_PANEL | f | SNP | C/T |
Location: Chr6:108306915 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Itpr1 | inositol 1,4,5-trisphosphate receptor 1 | Intron | ||||||
Rr399811 | regulatory region 399811 | 1956 bp downstream | ||||||
Rr399812 | regulatory region 399812 | 1344 bp downstream | ||||||
Rr636076 | regulatory region 636076 | 1990 bp distal | ||||||
Rr636077 | regulatory region 636077 | 503 bp proximal |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/25/2025 MGI 6.24 |
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