rs36338400 SNP Detail

Summary

• ID
  rs36338400
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108306915 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTACTGAA AGGCGTTTGT
  TAGACATAGG AGTAAGTTTG CGAGCCGTTT TTTTTGAGGG TGCCCTTTGA TCTTGCCCGT
  CTTCCCATTG ATTTGTTTGC TGCATGTTTA CTGAATGCAC GAGCAGCAGA CTCGTCAGGA
  AGAGCAACCC TCCTCTCTGT ACTAATCGTG TAGTAAGTTT GAGACAGGAT GGGTCTTACG
  Y
  ATGTGGTATT TTGCATTTCT TTTTCATTGA TACCTTAGTG GTAAGAAATT ATCCTGGTGA
  GGAACTGACA CTCATAACAC CCACCCCCTT CTGAAACTTA TTCTGCTGGT TTTTATCTTT
  TCAGAAAAAA AAAAGGTATA AATGATCAGC AGATGTTGTT TGTTTCTTAA TTGTGACTCT
  CTCGATAAGA GTCCATTTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51817513	NES14771504	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36338400					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51817513	NES14771504	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108306915 () rs orientation: forward

Symbol	Name	Function Class
Itpr1	inositol 1,4,5-trisphosphate receptor 1	Intron
Rr399811	regulatory region 399811	1956 bp downstream
Rr399812	regulatory region 399812	1344 bp downstream
Rr636076	regulatory region 636076	1990 bp distal
Rr636077	regulatory region 636077	503 bp proximal