rs36338312 SNP Detail

Summary

• ID
  rs36338312
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:26205143 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTGCACCC TGTAGTGACT
  TGCCAGACCT ATAAGTGGTC CTCTGTTTGT CAACCTGTGC TGAGCTTGTA TCCATTAGCT
  GGGTGTGACT ATAAATTTGG AAGTGTTCTC TATGAGCTAC GTCCTTTGCT ATTGGCTGTC
  AGCATGGACT TACCTCACAC AAGGCTTATC AGAACTTTGT GTAGAGATTT ACTATAGACA
  Y
  GTCATCAGCC CTCCAAGTAG ATTATACAAA GAGAAGGTCA AAGCTGCCCC TTTTCTTTTT
  CACCATCCAA AAAGAACATA ATGAAGCCTT GGAAAATATC AGCTACTCTT GACAGAAAAG
  TATTTCCAAG CTACTGCAGA GGTATGTCAA CTCACTCACC TTTGTCATCA GTCTGAGACT
  CTCAGTCACC ACAAGCACCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51446390	NES14438701	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36338312					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51446390	NES14438701	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:26205143 () rs orientation: forward

Symbol	Name	Function Class
Nlgn1	neuroligin 1	Intron
Rr574308	regulatory region 574308	390 bp proximal
Rr574309	regulatory region 574309	1438 bp proximal