rs36335228 SNP Detail

Summary

• ID
  rs36335228
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:15185139 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAGGTTAG TAATTGATGG
  TATCTAGCGT TCAAAGACTG GGGCTTGATT AACAGCTGCT TGGACAAATT GTCATTGTGA
  AGTGGTTTTG ATGTGCATTG AAGATTATTT CTTTCTGGCT TATCTGATGT TGTGGCTGTG
  AAATGCTTGT CTTGGATTTG CTTATTTTTG TAAACTACTT CCTTTGGCTG TAAATTGCAG
  Y
  GCACTGGAGC TTTACCAAAA GTACAGTGTA TAATGGTAAG CTTCTCCTAA TAAGGGAAGC
  AAGAAGTGTA TTTATCACAG ACATGAAAGC TAACCGAGGA CTTGAGAGAC TCAAACTGGT
  TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC
  TGTTTCTCTC CCTCTCTCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss51242621	NES13801347	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	C	C	T	T	T		C	T	T		C
ss321751556	CHEV_6_15135140	CHEVERUD	SCREENING_POP	f	SNP											C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs36335228					SNP	T	T	T	C	T	C	C	T	T	T	C	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51242621	NES13801347	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:15185139 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Foxp2	forkhead box P2			Intron
				Noncoding-Transcript-Variant
Rr626646	regulatory region 626646			1832 bp distal
Rr626647	regulatory region 626647			483 bp distal
Rr626648	regulatory region 626648			within coordinates
Rr626649	regulatory region 626649			377 bp proximal
Rr626650	regulatory region 626650			1417 bp proximal
Tssr54974	transcription start site region 54974			559 bp downstream
Tssr54975	transcription start site region 54975			478 bp downstream
Tssr54976	transcription start site region 54976			395 bp downstream
Tssr54977	transcription start site region 54977			373 bp downstream
Tssr54978	transcription start site region 54978			75 bp upstream
Tssr54979	transcription start site region 54979			230 bp upstream
Tssr54980	transcription start site region 54980			299 bp upstream
Tssr54981	transcription start site region 54981			316 bp upstream
Tssr54982	transcription start site region 54982			442 bp upstream
Tssr54983	transcription start site region 54983			467 bp upstream
Tssr54984	transcription start site region 54984			499 bp upstream
Tssr54985	transcription start site region 54985			515 bp upstream
Tssr54986	transcription start site region 54986			718 bp upstream
Tssr54987	transcription start site region 54987			1664 bp upstream
Tssr54988	transcription start site region 54988			1711 bp upstream
Tssr54989	transcription start site region 54989			1762 bp upstream