rs36333804 SNP Detail

Summary

• ID
  rs36333804
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:135871088 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGGAATAC TGCACACATG
  TCCGATGAGA TATTAATCTT TGAAGGTGTA TAGTTCCACC TAAATATTGT TAACTTGCTT
  TGGCATAGTG GGCATTTTCT TGCTATGGTT GAACATTTTC AAATTTTAGT AGTGTTCTAC
  ATATCGACTG TTCTTGCCTG TATCATCAGA AATCTACTCT CTAGGAAGCA TCTTAAGAGG
  Y
  TTCAGTGCTG AGAGGAAACA TCTCAAGCTG GACACAGGGT TTCACTGCTA TACTGTGCCT
  TTGACTTTGG TTCCGTAATT ATGACTTCCT GGCAGAAAGT TGATTTCACA AGACAATCTG
  TGAGTTTTAT ACATCAAAGT GAAATTATCA ACATACCAGA AGCTTTCACA CTGTCCTCTC
  AAGGGCTTTT GGTTATGTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51642404	NES14646559	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36333804					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51642404	NES14646559	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:135871088 () rs orientation: forward

Symbol	Name	Function Class
Bank1	B cell scaffold protein with ankyrin repeats 1	Intron
Rr585808	regulatory region 585808	7 bp proximal
Tssr35842	transcription start site region 35842	1837 bp downstream