rs36329844 SNP Detail

Summary

• ID
  rs36329844
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:86762149 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGGG TCGACTGAAA GGCCATTACA
  K
  TCAGACCTTG TTCTCCAGCC TGCGG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	CAST/EiJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss51749620	NES14800012	PERLEGEN	MM_PANEL2	f	SNP	T	T	G		G	G		G
ss321847236	CHEV_6_86735161	CHEVERUD	SCREENING_POP	f	SNP				T			G
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	CAST/EiJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs36329844					SNP	T	T	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51749620	NES14800012	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:86762149 () rs orientation: forward

Symbol	Name	Function Class
Anxa4	annexin A4	Intron
Rr633512	regulatory region 633512	30 bp distal
Tssr57506	transcription start site region 57506	85 bp downstream
Tssr57507	transcription start site region 57507	320 bp upstream
Tssr61859	transcription start site region 61859	1630 bp upstream
Tssr61860	transcription start site region 61860	352 bp downstream
Tssr61861	transcription start site region 61861	380 bp downstream