rs36329185 SNP Detail

Summary

• ID
  rs36329185
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:88325552 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTATCTGT GGTCTCAGAC
  CTAGAAGTCC AAAGATATTT TGGAGGGCTA GTCAATGGGC AACCTAGGCA GAGGACAGCA
  CTGCTCCTCT AGGCTTTCCC CCTTCCAGGA TACCCAGGTT GTACATCTCC CATACTGAAA
  CTATGACCTA GACTTGGCTC TCCCTGAACA TAACCATATG TGCTCAACCC CCAAGAGAAC
  W
  GGGTAGACCC ACAGTTGTAG GACCAGGCCC ATCAGAGCCT CCCTGGGAGT ACTGTGGGCC
  TCAGCACTAT TCCTGAGAGT AGACTGTCAG ACCATAGAAC TGTGCCCAGA AGAAAGGGAG
  ACTACCTGTA GCCTCCCCTC CCCCAGCCTT AAAGGTTCCA CTGTTTACAT CGGGATGGAG
  CTTGCCGCTC AATCATTCTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51359543	NES13742119	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36329185					SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51359543	NES13742119	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:88325552 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Eefsec	eukaryotic elongation factor, selenocysteine-tRNA-specific			Intron
				Noncoding-Transcript-Variant
Rr633876	regulatory region 633876			1034 bp distal