rs36327242 SNP Detail

Summary

• ID
  rs36327242
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:65533156 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTCTGTCT TTAGGTTTTT
  TTTTTTTTTT TTATGGAGTT AAAAGTTCTG GTTTGTAATA CTTACCATTG TCTACAAGTG
  CAGGATCTAC TACTACTTAT GCAAATGAAC TGATCTGTGA GTTCTCTTCA GGGGACTTTT
  TTCAGTATGA ATCGAAAGAC TCTGCTATGT GGTCTGCCAT GTCCCTTCTT CTAGCACTTG
  W
  GTTCATCCTT CTGTGAACAC CATTGTTTGC CAGATCATCT TATCCTTAAG TACGTTTGGA
  GCACATAACA ATCTTTCCAG TTCTTGATAA ATGAGATAAT GTTCTCCATG GCTTAGTCAG
  TTCTGCAGCC TTGTTTCTCG TAAGCTGCTG TTTGTACTTG GCATTCTGAC TCGCTCATGT
  TCTGTTTTCT GTTTCTAAAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50965480	NES13945897	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36327242					SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50965480	NES13945897	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:65533156 () rs orientation: forward

Symbol	Name	Function Class
Rr577712	regulatory region 577712	135 bp proximal
Rr577713	regulatory region 577713	1328 bp proximal