rs36326471 SNP Detail

Summary

• ID
  rs36326471
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:82960149 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTTGGGTA CCAACCTTCG
  GAGGGAAATG GACATTAAAA TGAAAAGGGC TTCTGAACTT GCAACTAGGG GCTGAGTAGC
  AATGAGTGCT TGCATCGCAC ACCTTGCACC TGGCGTATTT CAAATGTATC CGTTGAGTGA
  GTTTATAAGT ATATGCATGG ATAAACAGAT AAGACCTATC AGTGACTCTG CTTGTTTACT
  Y
  GGGCATGCGA TTGCAAACGT TACAGTCATT AGTCTTTTTA GCATGCTTCT CTTAACTACA
  ACTGAAGAGT AAGAGTTGAA GGCCAAGCTG AACTTCTGGC ACAAACATCA GAACAGCGTG
  GCGGTAGGAG AAGGTCTGTG GCAGGCATAA AGAGTAGGAG GTCGCTGGGC GGTGGTGGAG
  CATGCCTTTA ATCCCAGCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50989852	NES13925214	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C	C	C	C	C	C	C	C	C	C
ss135410458	ENSMUSSNP2605988	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36326471					SNP	T	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50989852	NES13925214	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:82960149 () rs orientation: forward

Symbol	Name	Function Class
Rr578826	regulatory region 578826	656 bp proximal
Rr578827	regulatory region 578827	1055 bp proximal