rs36323272 SNP Detail

Summary

• ID
  rs36323272
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:90454130 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCCTGGTG CCAGGCTGCC
  GTATGTGGTG GACTGCCAGC CAGGCAAATT GCCAGTTGCC CTCATAGCCG CCGGCTACTT
  TGAACTCTCC TGGACGCCTT GAGGAACTGA ACTGTGATCA GCTGCTGGCT TCAGAAGCAC
  GATGCTGGTT CCGGAGCCAT ATCCCACCCA CACAGTGGTT TCAAACAGCT TGCCCACCAC
  W
  AGCCTCTCTG AACTCTAGAT GACCCTGTAA CCATTTTCAC TCACACCAGA GAGGAGCCTT
  CTCTTGTTGG ACTGAGAATG AAGGACTGTG TGGGGCTAGT GTCAACGCAG CTCATTTGCA
  TGAAGCGTTG CTTCTGATTG GTGCTGGCAG CCTTGCCACG CCCCCTTTCT GGATATTTCT
  GGAAGTCTGA CTTACAGCTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51362825	NES13737464	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	T	A	A	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36323272					SNP	A	A	A	A	A	T	A	A	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51362825	NES13737464	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:90454130 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm44421	predicted gene, 44421			1318 bp upstream
Gm66826	predicted gene, 66826			within coordinates
Klf15	Kruppel-like transcription factor 15			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Rr634215	regulatory region 634215			1696 bp distal
Rr634216	regulatory region 634216			932 bp distal
Rr634217	regulatory region 634217			within coordinates