rs36322596 SNP Detail

Summary

• ID
  rs36322596
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:75769391 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCCTCTTC TGGCCTCTGG
  CGGCACTACA GGCACAGGGT ACATAGACAT ACGCAGGAAA ACCCAGATAC AAAACAAAAA
  CATATTTTAT TTTTTTAAAA AGTCTTCTGT AAAAAGAAAA GAAAAATCAA TTGCAGTTTA
  CAAAACATTT GTAACTACCA AGCTACTTAG TGTTCGCCAG AAGCCACATG AAAATCAACA
  Y
  GAGGTCAAGA ACTTCCCAGT CTTTTCCATG TTAGCATCAT CACTAAACAA TCACAGGCAC
  TCGTTGCAGG CGCTTGTTGC CTTTCCTTTC CCTTCTGTTG CTGTTGTTGA GAGATCCTGT
  TGTTGCGGTT GTTGATGATG ATGATGACGA CGACGACGAC GACGACGACG ACGACGACGA
  CGGTGGATTC TCCCCACCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51554957	NES14684337	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36322596					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51554957	NES14684337	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:75769391 () rs orientation: forward

Symbol	Name	Function Class
Rr397723	regulatory region 397723	115 bp downstream
Rr578364	regulatory region 578364	827 bp distal
Rr578365	regulatory region 578365	94 bp distal
Rr578366	regulatory region 578366	173 bp distal