rs36322170 SNP Detail

Summary

• ID
  rs36322170
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:41354480 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATGT CTGCTCCTGA TGGATCTGTA
  Y
  GCATGTCAGG GAAGCTCAGG CGGTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J
ss50825211	NES13542358	PERLEGEN	MM_PANEL2	f	SNP		T	T	C	T	T	T	T		T	C
ss146402157	ENSMUSSNP4950258	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T				T
ss325809401	CHEV_19_41440531	CHEVERUD	SCREENING_POP	f	SNP									T			T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J
rs36322170					SNP	C	T	T	C	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50825211	NES13542358	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:41354480 () rs orientation: forward

Symbol	Name	Function Class
Pik3ap1	phosphoinositide-3-kinase adaptor protein 1	Intron
Rr405959	regulatory region 405959	1420 bp upstream
Rr547615	regulatory region 547615	168 bp distal
Rr547616	regulatory region 547616	336 bp proximal
Rr547617	regulatory region 547617	1102 bp proximal